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The Epstein-Barr virus lytic cycle activator Zta interacts with methylated ZRE in the promoter of host target gene egr1

Published in Journal of General Virology, 2009

My first first author publication: EBV, EMSAs, and EGR1.

Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine

Published in Bioinformatics, 2013

Decombinator, for TCRseq annotation.

Computational analysis of stochastic heterogeneity in PCR amplification efficiency revealed by single molecule barcoding

Published in Scientific Reports, 2015

Inter-molecular stochasticity in PCR.

The sequence of sequencers: The history of sequencing DNA

Published in Genomics, 2016

DNA sequencing technology review.

Dynamic Perturbations of the T-Cell Receptor Repertoire in Chronic HIV Infection and following Antiretroviral Therapy

Published in Frontiers in Immunology, 2016

TCRseq of chronically infected HIV patients.

Quantitative Characterization of the T Cell Receptor Repertoire of Naïve and Memory subsets Using an Integrated experimental and Computational Pipeline Which Is Robust, economical, and Versatile

Published in Frontiers in Immunology, 2017

The Chain lab TCRseq pipeline.

Murine xenograft bioreactors for human immunopeptidome discovery

Published in Scientific Reports, 2019

Developing murine xenografts for immunopeptidomics.

Decombinator V4: an improved AIRR-C compliant-software package for T-cell receptor sequence annotation

Published in Bioinformatics, 2020

Decombinator version 4.

Stitchr: stitching coding TCR nucleotide sequences from V/J/CDR3 information

Published in Nucleic Acids Research, 2022

Stitchr for generating full coding TCR sequences.

The differential immunological impact of photon vs proton radiation therapy in high-grade lymphopenia in patients with gastrointestinal tumors

Published in Clinical and Experimental Immunology, 2025

Differential radiation-induced lymphopenia from photon vs proton based radiotherapy in GI cancer patients.

Talk 1 on Relevant Topic in Your Field

Published: March 01, 2012

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Tutorial 1 on Relevant Topic in Your Field

Published: March 01, 2013

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Talk 2 on Relevant Topic in Your Field

Published: February 01, 2014

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Conference Proceeding talk 3 on Relevant Topic in Your Field

Published: March 01, 2014

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Teaching experience 1

Undergraduate course, University 1, Department, 2014

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Teaching experience 2

Workshop, University 1, Department, 2015

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